##gapPenalties=axtChain O=400 E=30
##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
chain 7301 Pf3D7_01 643292 + 22 221 Pf3D7_11_v3 2038340 + 128 726 1251
62	43	249
42	0	193
52

chain 1027 Pf3D7_01 643292 + 84 127 Pf3D7_05_v3 1343557 + 173 216 1900
43

chain 59356007 Pf3D7_01 643292 + 223 642571 Pf3D7_01_v3 640851 + 0 640851 14
57393	1	12
224	1	1
58	1	1
26	3	3
52	1	1
67	1	1
52	1	1
66	1	1
61	1	1
84	2	1
67	11	1
50	15	6
31	17	21
31	3	0
27	2	0
46233	0	1
3906	1	1
68	1	1
393	1	0
1643	1	0
11507	1	0
4960	0	1
33615	16	16
934	1	0
515	1	1
20	1	1
4917	22	22
18249	0	1
1561	36	35
141	1	0
741	1	0
73	1	0
25578	15	15
13975	1	0
147	21	21
368	20	20
10491	18	18
31458	13	13
2577	0	2
1049	2	23
30	0	5
31	4	0
6372	4	0
213	0	1
331	0	3
6228	1	0
6200	2	0
4524	0	4
20	1	1
2944	940	0
2346	18	18
1131	4	4
6532	0	1
1372	39	38
1193	2	0
3316	4	4
1203	89	91
193	15	15
1776	0	1
54	2	0
4354	0	1
2888	0	1
172	13	13
9854	35	35
41490	1	0
468	52	52
7557	22	22
17416	1	1
32	3	3
25846	0	1
874	0	1
4674	1	1
23	1	1
9756	0	1
1379	1	1
56	1	1
136	62	62
139	3	3
23	1	1
617	1	1
54	14	15
23187	0	1
46973	573	0
50043	0	1
7319	0	1
65455

chain 43429 Pf3D7_01 643292 + 301231 301707 Pf3D7_01_v3 640851 + 301007 301484 1211
141	0	1
335

chain 27246 Pf3D7_01 643292 + 519419 519715 Pf3D7_01_v3 640851 + 518271 518567 1920
296

chain 1092 Pf3D7_01 643292 + 642599 643218 Pf3D7_09_v3 1541735 + 1541546 1541708 1323
7	54	0
63	313	0
33	90	0
59

chain 6904 Pf3D7_01 643292 + 642723 642917 Pf3D7_07_v3 1445207 - 1444988 1445203 1989
9	126	147
59

chain 2278 Pf3D7_01 643292 + 642950 643036 Pf3D7_05_v3 1343557 - 1343421 1343490 3428
24	6	0
30	1	0
4	18	8
3

chain 1377 Pf3D7_01 643292 + 643069 643115 Pf3D7_03_v3 1067971 + 1065439 1065485 1719
46

chain 87851522 Pf3D7_02 947102 + 0 947102 Pf3D7_02_v3 947102 + 0 947102 13
380204	35	35
178276	29	29
114853	0	1
46922	70	70
50804	0	1
113117	2	0
62790

chain 98216113 Pf3D7_03 1060087 + 0 1060087 Pf3D7_03_v3 1067971 + 3324 1063417 12
70436	9	7
21128	1	0
90	1	0
37007	7	8
17322	0	1
513	1	0
500	19	22
60334	0	2
859	4	5
2041	1	1
105	1	1
1832	1	0
33527	1	0
485	1	1
27	1	1
9712	35	35
37592	0	1
20276	1	0
35416	1	1
54	1	1
110	1	1
32	1	1
40189	4	4
2914	0	1
64322	0	1
634	1	0
2010	1	0
26	1	1
121	1	0
23401	0	2
347	2	0
230	0	1
153	1	0
819	1	1
44	1	1
9671	1	1
24	1	1
963	0	1
159	18	18
28281	0	1
315	2	0
309	4	4
5423	1	0
26570	4	4
10827	6	3
5	0	3
11	1	0
102	1	1
320	0	2
424	7	8
156	1	0
9686	4	4
3965	2	0
652	1	0
1324	32	34
6773	23	23
3541	0	1
4760	8	7
93	14	13
684	4	4
25	11	11
759	3	3
94	0	1
4	1	0
59	6	7
10	1	0
58	1	1
1323	2	2
7	0	1
11	0	1
9	0	1
9156	3	4
10796	1	1
16	5	5
46473	0	1
4311	15	15
20044	0	1
795	1	1
47	1	1
253	0	1
13411	0	1
73	5	3
11411	11	11
233	7	6
231	0	2
39100	5	6
1130	1	0
3292	18	18
43908	0	1
61	1	1
73	1	1
51	1	1
9902	1	1
38	2	2
69775	1	1
52	2	2
2160	1	0
647	0	1
148	0	1
18068	2	0
25228	1	1
62	2	2
8372	41	40
10291	1	0
36	0	1
20881	0	2
121	1	1
42	1	1
2360	43	43
20040	1	1
27	2	2
80	73	73
64375

chain 20920 Pf3D7_04 1204112 + 84 571 Pf3D7_03_v3 1067971 - 189 578 550
18	114	0
61	153	204
48	35	0
58

chain 485 Pf3D7_04 1204112 + 125 164 Pf3D7_02_v3 947102 + 382 421 1403
39

chain 2676 Pf3D7_04 1204112 + 352 380 Pf3D7_03_v3 1067971 + 3115 3143 16927
28

chain 1201 Pf3D7_04 1204112 + 380 430 Pf3D7_14_v3 3291936 + 93 143 998
50

chain 841 Pf3D7_04 1204112 + 478 513 Pf3D7_14_v3 3291936 + 186 221 998
35

chain 45132 Pf3D7_04 1204112 + 624 6436 Pf3D7_03_v3 1067971 + 197 3322 86
50	211	17
45	228	0
49	173	0
31	294	186
55	20	171
31	63	0
49	56	0
48	195	0
66	384	43
55	16	37
55	85	293
49	21	0
52	105	101
65	167	251
24	71	0
49	21	0
48	220	179
55	22	72
24	98	0
56	41	0
48	535	0
23	196	0
48	8	0
66	66	60
21	21	0
57	94	30
17	64	0
62	260	232
52	173	1
39	418	0
49	34	0
14

chain 205 Pf3D7_04 1204112 + 674 723 Pf3D7_03_v3 1067971 - 179 347 167
23	4	123
22

chain 1026 Pf3D7_04 1204112 + 723 885 Pf3D7_06_v3 1418242 - 123 263 93
54	21	0
65	0	7
12	9	1
1

chain 1443 Pf3D7_04 1204112 + 930 1158 Pf3D7_06_v3 1418242 - 301 364 93
38	166	1
24

chain 695 Pf3D7_04 1204112 + 968 1134 Pf3D7_03_v3 1067971 - 551 677 167
5	1	0
39	0	2
47	42	1
32

chain 1804 Pf3D7_04 1204112 + 1060 1102 Pf3D7_03_v3 1067971 - 1395 1437 550
42

chain 234 Pf3D7_04 1204112 + 1245 1282 Pf3D7_06_v3 1418242 - 396 433 93
37

chain 975 Pf3D7_04 1204112 + 1429 1662 Pf3D7_03_v3 1067971 - 797 947 167
21	55	0
77	28	0
52

chain 1461 Pf3D7_04 1204112 + 1465 1499 Pf3D7_03_v3 1067971 - 1934 1968 550
34

chain 1203 Pf3D7_04 1204112 + 1582 1610 Pf3D7_03_v3 1067971 - 2010 2038 550
28

chain 1847 Pf3D7_04 1204112 + 1662 1705 Pf3D7_03_v3 1067971 - 3307 3707 550
18	0	357
25

chain 205 Pf3D7_04 1204112 + 1811 1860 Pf3D7_03_v3 1067971 - 1015 1092 167
25	0	28
24

chain 699 Pf3D7_04 1204112 + 2027 2194 Pf3D7_03_v3 1067971 - 1168 1451 167
4	8	133
60	17	8
38	0	1
11	1	0
28

chain 888 Pf3D7_04 1204112 + 2194 2222 Pf3D7_03_v3 1067971 - 1842 1877 533
25	0	7
3

chain 893 Pf3D7_04 1204112 + 2288 2429 Pf3D7_06_v3 1418242 - 464 541 93
39	8	1
4	1	0
21	56	0
12

chain 234 Pf3D7_04 1204112 + 2361 2417 Pf3D7_03_v3 1067971 - 1514 1576 167
29	0	6
27

chain 1017 Pf3D7_04 1204112 + 2429 2672 Pf3D7_03_v3 1067971 - 1589 1713 167
16	1	0
19	49	0
61	69	0
28

chain 555 Pf3D7_04 1204112 + 2590 2626 Pf3D7_07_v3 1445207 + 633 669 1015
36

chain 356 Pf3D7_04 1204112 + 2798 2883 Pf3D7_03_v3 1067971 - 1761 1800 167
25	46	0
14

chain 1458 Pf3D7_04 1204112 + 2823 2869 Pf3D7_03_v3 1067971 - 2455 2490 533
21	11	0
14

chain 380 Pf3D7_04 1204112 + 3005 3065 Pf3D7_06_v3 1418242 - 686 802 93
8	0	56
52

chain 554 Pf3D7_04 1204112 + 3184 3223 Pf3D7_02_v3 947102 - 306 345 1315
39

chain 1069 Pf3D7_04 1204112 + 3291 3322 Pf3D7_03_v3 1067971 - 3544 3575 867
31

chain 297 Pf3D7_04 1204112 + 3366 3437 Pf3D7_03_v3 1067971 - 1842 1884 167
31	30	1
10

chain 1034 Pf3D7_04 1204112 + 3397 3427 Pf3D7_03_v3 1067971 - 3678 3714 867
22	0	6
8

chain 150 Pf3D7_04 1204112 + 3592 3632 Pf3D7_14_v3 3291936 + 500 540 290
40

chain 321 Pf3D7_04 1204112 + 3657 3688 Pf3D7_10_v3 1687656 + 305 336 1346
31

chain 329 Pf3D7_04 1204112 + 3715 3767 Pf3D7_06_v3 1418242 - 802 854 93
52

chain 468 Pf3D7_04 1204112 + 3886 3960 Pf3D7_06_v3 1418242 - 855 922 93
53	7	0
14

chain 1640 Pf3D7_04 1204112 + 4166 4425 Pf3D7_06_v3 1418242 - 988 1137 93
55	104	1
80	7	0
13

chain 389 Pf3D7_04 1204112 + 4221 4325 Pf3D7_14_v3 3291936 + 571 641 290
51	35	1
18

chain 908 Pf3D7_04 1204112 + 4437 4654 Pf3D7_03_v3 1067971 - 2480 2641 167
76	119	63
22

chain 176 Pf3D7_04 1204112 + 4677 4719 Pf3D7_03_v3 1067971 - 2664 2727 167
8	2	23
32

chain 576 Pf3D7_04 1204112 + 4719 4810 Pf3D7_06_v3 1418242 - 1137 1220 93
67	8	0
16

chain 393 Pf3D7_04 1204112 + 5160 5254 Pf3D7_03_v3 1067971 - 3528 3644 167
65	15	37
14

chain 1595 Pf3D7_04 1204112 + 5405 5657 Pf3D7_06_v3 1418242 - 1268 1377 93
13	74	0
55	14	0
20	55	0
21

chain 938 Pf3D7_04 1204112 + 5437 5492 Pf3D7_07_v3 1445207 + 893 948 749
55

chain 1323 Pf3D7_04 1204112 + 5581 5636 Pf3D7_03_v3 1067971 - 2378 2462 887
10	0	1
13	8	15
21	0	21
3

chain 481 Pf3D7_04 1204112 + 5709 5824 Pf3D7_03_v3 1067971 - 3783 3822 167
4	76	0
35

chain 330 Pf3D7_04 1204112 + 5728 5777 Pf3D7_01_v3 640851 - 207 256 2752
49

chain 348 Pf3D7_04 1204112 + 5824 5879 Pf3D7_06_v3 1418242 - 1405 1460 93
55

chain 728 Pf3D7_04 1204112 + 5921 6095 Pf3D7_03_v3 1067971 - 3898 3961 167
35	111	0
28

chain 1511 Pf3D7_04 1204112 + 5956 5981 Pf3D7_04_v3 1200490 + 52 77 1783
25

chain 767 Pf3D7_04 1204112 + 5981 6026 Pf3D7_07_v3 1445207 + 1133 1178 749
45

chain 1511 Pf3D7_04 1204112 + 6126 6151 Pf3D7_04_v3 1200490 + 222 247 1783
25

chain 439 Pf3D7_04 1204112 + 6234 6339 Pf3D7_03_v3 1067971 - 3968 4045 167
49	28	0
28

chain 478 Pf3D7_04 1204112 + 6283 6311 Pf3D7_07_v3 1445207 + 1345 1373 749
28

chain 110979609 Pf3D7_04 1204112 + 6447 1204112 Pf3D7_04_v3 1200490 + 0 1200490 11
95930	1	0
3170	2	0
7079	4	4
7221	1	0
3934	2	0
576	4	0
144	0	1
8099	1	0
10740	1	0
9128	1	0
445	6	6
279	2	1
1830	8	10
758	1	1
19	1	1
24016	1	0
24322	1	1
20	1	1
6097	2	0
880	2	0
870	1	0
11250	26	27
259	1	1
12	1	1
14176	1	0
5525	0	2
26	0	1
4	22	23
5925	1	0
2511	1	0
1072	1	0
919	1	0
2436	6	6
10604	1	0
17900	2	0
577	3	1
3548	8	8
7979	1	0
13445	2	0
319	2	0
375	0	2
10483	94	94
9896	1	0
1904	1	0
688	2	0
932	1	0
2477	23	23
9883	239	0
6	202	0
8372	5	0
11211	1	0
8514	25	25
2329	1	0
3296	1	10
18	9	0
3112	2	0
15929	0	1
6272	0	60
102	30	0
1024	0	1
4357	4	0
1164	0	2
83279	27	27
84704	86	0
53424	0	2
10932	1	1
36	1	1
372	1	0
7130	1	0
82300	0	1
11177	0	1
84167	0	1
196	1	0
131	0	1
53034	1	0
326	1	0
9572	0	1
26136	0	1
1332	13	13
16455	2	2
109	6	6
94	68	2609
297	1	1
55	1	1
44139	8	8
14	1	0
51	9	6
2263	9	8
2557	174	178
977	1	1
34	1	1
32853	11	11
843	1	2
1675	1	0
37330	0	1
11011	0	1
3599	48	47
6320	36	36
5575	60	63
7	2	0
10	8	6
87	4	0
10	1	5
170	1	1
19	1	1
23610	10	821
7277	0	2
1024	2	0
193	8	8
5433	0	1
3108	0	1
12652	1	1
40	0	1
31	0	1
27	0	1
181	1	1
45	1	1
1475	0	2
60004

chain 19033 Pf3D7_04 1204112 + 347379 347584 Pf3D7_04_v3 1200490 + 340902 341107 3124
205

chain 7744 Pf3D7_04 1204112 + 347654 347815 Pf3D7_04_v3 1200490 + 340736 340897 1733
161

chain 124550503 Pf3D7_05 1343552 + 0 1343552 Pf3D7_05_v3 1343557 + 0 1343557 9
79493	1	1
30	8	8
354067	0	1
794	0	1
294964	1	0
4	0	1
35	7	7
70712	0	1
18067	10	10
47	11	11
77036	0	2
5235	9	9
75879	15	15
64284	1	0
37794	0	1
4854	4	4
48378	5	5
6560	0	1
35655	0	1
124963	2	0
6023	47	47
11887	113	113
159	9	9
15356	1	1
25	7	7
11000

chain 131548864 Pf3D7_06 1418244 + 0 1418244 Pf3D7_06_v3 1418242 + 0 1418242 7
43399	0	3
211519	0	1
27074	4	4
117748	36	36
19900	0	1
144296	19	19
77925	76	75
33803	1	0
177392	1	0
479	0	1
19507	1	0
33269	9	9
27167	4	4
9365	2	0
985	1	0
30995	24	24
119663	10	10
9327	6	6
105410	1	0
32869	1	0
110894	0	1
169	6	6
2209	0	1
61740	1	0
937

chain 899 Pf3D7_07 1501717 + 2 68 Pf3D7_01_v3 640851 + 30 96 1559
66

chain 898 Pf3D7_07 1501717 + 68 125 Pf3D7_13_v3 2925236 + 103 160 1356
57

chain 1540 Pf3D7_07 1501717 + 141 350 Pf3D7_03_v3 1067971 - 3658 3839 1350
55	15	1
52	14	0
73

chain 220 Pf3D7_07 1501717 + 379 419 Pf3D7_02_v3 947102 - 387 427 1592
40

chain 17233 Pf3D7_07 1501717 + 419 1286 Pf3D7_04_v3 1200490 - 0 342 1307
62	50	0
28	1	0
8	14	0
39	3	42
16	302	0
64	0	35
19	5	0
21	227	0
8

chain 1130 Pf3D7_07 1501717 + 647 689 Pf3D7_06_v3 1418242 + 248 290 3219
42

chain 805 Pf3D7_07 1501717 + 710 760 Pf3D7_14_v3 3291936 + 1062 1112 2197
50

chain 1904 Pf3D7_07 1501717 + 760 798 Pf3D7_05_v3 1343557 - 59 97 3752
38

chain 1492 Pf3D7_07 1501717 + 798 871 Pf3D7_07_v3 1445207 + 718 791 1709
73

chain 748 Pf3D7_07 1501717 + 871 932 Pf3D7_05_v3 1343557 + 313 374 1682
61

chain 701 Pf3D7_07 1501717 + 1051 1095 Pf3D7_07_v3 1445207 - 73 117 7658
44

chain 691 Pf3D7_07 1501717 + 1095 1131 Pf3D7_10_v3 1687656 + 186 222 2839
36

chain 572 Pf3D7_07 1501717 + 1210 1238 Pf3D7_07_v3 1445207 + 794 822 1709
28

chain 10693969 Pf3D7_07 1501717 + 1286 116669 Pf3D7_08_v3 1472805 - 0 115464 15
27003	2	0
13	28	0
20172	4	3
5781	0	167
2689	0	8
160	1	1
128	0	7
67	16	11
39	5	4
149	20	0
18472	1	1
34	1	1
1100	0	1
9032	2	0
309	1	1
96	1	1
636	1	0
2448	1	0
1067	14	14
10190	9	0
201	3	10
1092	22	0
445	0	1
3567	7	7
37	1	1
3032	1	0
461	15	1
171	2	0
5831	1	0
802

chain 2643 Pf3D7_07 1501717 + 28304 28332 Pf3D7_08_v3 1472805 - 27044 27072 7624
28

chain 21329 Pf3D7_07 1501717 + 116814 118398 Pf3D7_06_v3 1418242 + 37816 39400 47
1584

chain 128117333 Pf3D7_07 1501717 + 118398 1500583 Pf3D7_07_v3 1445207 + 63020 1445207 8
109	7	7
165	13	13
23	1	1
54	1	1
22	1	1
181	40	40
82	1	1
48	8	0
291	0	1
192	0	5
703	3	0
1744	0	1
1432	0	6
18143	1	0
152	1	0
1154	0	12
8957	6	6
11378	1	0
12905	0	1
169	0	3
7009	9	0
8141	5	0
6653	0	1
10901	0	1
41804	1	0
276	1	0
208	1	0
8469	1	0
9247	29	28
38222	17	17
9181	1	0
48142	2	4
50	9	9
50	2	2
32981	6	6
14544	31	31
3691	0	1
280608	0	1
8752	0	1
51946	3	3
45220	23	23
100496	8	8
14245	6	6
26667	7	7
98299	26	26
6000	19	19
58409	28	28
7182	6	6
79657	1	1
66	1	1
59	6	6
18	7	7
238	1	1
36	1	1
16933	1	1
32	1	1
83	1	1
36	1	1
26167	10	10
113304	1	1
38	1	1
40437	1	1
28	3	3
138	4	4
594	15	15
50	14	14
34264	20	20
74295

chain 539 Pf3D7_07 1501717 + 118975 119015 Pf3D7_06_v3 1418242 + 39977 40017 47
40

chain 3050 Pf3D7_07 1501717 + 1500589 1500744 Pf3D7_06_v3 1418242 + 1417143 1417236 2212
51	62	0
42

chain 12984 Pf3D7_07 1501717 + 1500778 1501526 Pf3D7_06_v3 1418242 - 1417965 1418221 2179
43	89	0
41	184	0
54	131	0
55	89	1
62

chain 1142 Pf3D7_07 1501717 + 1500826 1500877 Pf3D7_06_v3 1418242 + 1416572 1416623 3469
51

chain 1142 Pf3D7_07 1501717 + 1501244 1501295 Pf3D7_06_v3 1418242 + 1416696 1416747 3469
51

chain 920 Pf3D7_07 1501717 + 1501398 1501454 Pf3D7_03_v3 1067971 - 1065097 1065153 2207
56

chain 695 Pf3D7_07 1501717 + 1501526 1501571 Pf3D7_13_v3 2925236 - 2924798 2924871 3281
10	12	40
23

chain 805 Pf3D7_07 1501717 + 1501571 1501620 Pf3D7_03_v3 1067971 - 1065181 1065230 2207
49

chain 918 Pf3D7_08 1419563 + 123 174 Pf3D7_03_v3 1067971 - 2143 2194 1536
51

chain 3129 Pf3D7_08 1419563 + 221 305 Pf3D7_14_v3 3291936 + 134 232 1478
55	1	15
28

chain 11380 Pf3D7_08 1419563 + 305 776 Pf3D7_13_v3 2925236 - 877 1758 1268
62	217	710
59	83	0
50

chain 2607 Pf3D7_08 1419563 + 367 437 Pf3D7_14_v3 3291936 + 327 462 1478
17	8	79
22	6	0
17

chain 3887 Pf3D7_08 1419563 + 437 584 Pf3D7_11_v3 2038340 + 35 219 1382
55	85	122
7

chain 2195 Pf3D7_08 1419563 + 643 726 Pf3D7_11_v3 2038340 + 463 691 1382
31	34	179
18

chain 1595 Pf3D7_08 1419563 + 799 852 Pf3D7_08_v3 1472805 - 25 78 1601
53

chain 1043 Pf3D7_08 1419563 + 898 926 Pf3D7_14_v3 3291936 + 575 603 1478
28

chain 2628 Pf3D7_08 1419563 + 926 989 Pf3D7_10_v3 1687656 - 128 191 1316
63

chain 124346373 Pf3D7_08 1419563 + 1008 1347585 Pf3D7_08_v3 1472805 + 0 1346514 10
51000	3115	3000
195	1	0
20065	5	5
27	11	12
14	1	0
4572	87	87
24297	9	9
2534	0	1
40171	0	2
16385	12	12
1544	13	9
6	0	4
37	43	44
42968	53	53
54262	0	1
12135	0	3
8509	48	48
22733	1	1
36	5	0
9	3	0
9	7	15
7494	14	4
8586	11	10
659	1	1
46	1	1
278	1	0
62	5	5
75	1	1
8348	5	5
18133	2	8
5005	0	1
23451	71	71
207	7	7
6468	1	0
40	0	1
12	0	1
2060	1	1
60	1	1
2451	2	0
6983	15	15
57	7	7
23918	13	13
29348	0	1
48772	1	1
55	4	4
33096	13	13
65	4	4
49	1	1
51	239	239
16409	8	8
19218	0	1
6713	7	7
1207	1	1
41	1	1
14918	1	1
120	1	1
14849	18	18
181	5	5
38	1	1
30638	1	1
34	4	4
10616	24	24
128	1	1
51	4	3
6934	3	3
39	1	1
1541	1	1
51	1	1
29345	1	1
47	3	3
5736	121	121
26138	20	20
16365	1	1
43	1	1
10345	2	0
7881	40	40
8646	0	1
125	19	19
272	6	0
5671	1	0
16804	10	10
9749	5	6
41	1	1
58	1	0
86	1	0
994	0	2
5412	0	2
28867	4	4
1000	1	0
265	1	0
126	12	12
483	5	0
11614	20	20
628	0	27
178	0	8
3806	22	22
2307	0	1
7077	20	20
31330	1	1
94	7	7
3714	1	1
49	1	1
8306	0	1
49440	0	24
114	0	4
198	12	0
1405	0	5
4175	0	1
11284	0	1
9061	38	38
1204	31	30
8613	4	5
7966	0	1
3437	1	1
27	1	1
29097	0	1
207	1	0
59343	1	1
20	1	1
6849	4	4
30	4	4
4790	4	4
53981	1	1
30	1	1
102795	0	1
56874	4	4
36618

chain 159462 Pf3D7_08 1419563 + 52008 55123 Pf3D7_10_v3 1687656 + 36222 39413 172
258	1	1
65	7	9
98	1	1
176	38	90
761	14	17
149	2	14
244	976	988
108	2	0
187	15	12
13

chain 2598 Pf3D7_08 1419563 + 52614 52644 Pf3D7_12_v3 2271494 + 42607 42643 489
23	0	6
7

chain 89385 Pf3D7_08 1419563 + 53822 54798 Pf3D7_09_v3 1541735 - 48083 49059 191
976

chain 1097969 Pf3D7_08 1419563 + 1347752 1361551 Pf3D7_04_v3 1200490 + 1155047 1168848 31
11286	10	10
2386	0	2
117

chain 5091161 Pf3D7_08 1419563 + 1361551 1419419 Pf3D7_07_v3 1445207 - 1387277 1445087 16
68	1	1
16	1	1
356	1	1
21	1	1
282	46	60
62	1	0
61	3072	3000
53793	0	8
28	7	0
51

chain 3660 Pf3D7_08 1419563 + 1362298 1362344 Pf3D7_04_v3 1200490 + 1169595 1169641 31
46

chain 244435 Pf3D7_08 1419563 + 1362468 1365540 Pf3D7_04_v3 1200490 + 1169765 1172700 31
235	2527	2390
68	13	13
229

chain 132791 Pf3D7_08 1419563 + 1362703 1364744 Pf3D7_09_v3 1541735 - 1510599 1512691 156
286	1009	1027
119	1	0
20	1	0
67	7	46
312	9	9
57	4	0
149

chain 8582 Pf3D7_08 1419563 + 1362989 1363998 Pf3D7_04_v3 1200490 - 1157423 1158432 186
1009

chain 6506 Pf3D7_08 1419563 + 1364744 1365230 Pf3D7_11_v3 2038340 - 1972340 1972829 114
55	0	1
23	1	0
29	0	3
27	1	1
282	2	3
63	1	0
2

chain 1663 Pf3D7_08 1419563 + 1419419 1419472 Pf3D7_12_v3 2271494 - 2271415 2271468 2173
53

chain 142922487 Pf3D7_09 1541723 + 0 1541723 Pf3D7_09_v3 1541735 + 0 1541735 6
85546	0	1
82684	0	1
107010	0	1
60400	0	4
38988	0	1
71091	0	1
91204	4	4
156472	0	1
19010	9	9
612433	16	16
9960	0	1
12685	10	10
96753	0	1
97448

chain 156483229 Pf3D7_10 1687655 + 1 1687655 Pf3D7_10_v3 1687656 + 0 1687656 5
241592	0	1
146109	332	333
222131	18	18
185308	16	16
12758	7	7
41341	0	1
67841	8	7
19860	0	1
386720	36	36
32542	0	1
80168	7	7
125	22	22
55	52	50
147516	123	123
102967

chain 188909253 Pf3D7_11 2038337 + 0 2038337 Pf3D7_11_v3 2038340 + 0 2038340 4
108000	30	29
9544	13	13
121417	8	9
52	1	1
38	1	1
89	4	4
139456	1	1
44	5	5
112363	0	1
138933	89	89
60	1	1
40	1	1
90	25	25
189659	8	8
129903	14	14
40047	4	4
110	1	1
11	1	1
36334	0	1
56193	7	7
150609	7	7
5785	29	29
31909	5	5
118057	3	3
28876	0	1
505114	70	70
115276

chain 2077 Pf3D7_11 2038337 + 108000 108030 Pf3D7_10_v3 1687656 - 114350 114380 20
30

chain 210382964 Pf3D7_12 2271478 + 0 2271478 Pf3D7_12_v3 2271494 + 0 2271494 3
85915	11	11
60081	0	1
7547	0	1
2430	13	14
21191	8	8
684	1	1
49	1	1
14307	14	14
1510	32	32
1743	1	1
52	1	0
6	0	2
11	4	3
17227	1	0
19141	1	1
45	1	1
8216	1	1
27	0	1
24133	6	6
91	1	1
16445	13	13
42146	5	6
21029	0	1
16883	18	18
40886	9	9
12245	4	5
19140	11	11
24205	0	1
39921	5	4
12526	56	56
20185	0	1
3758	73	72
19905	0	1
2536	1	1
32	1	1
63721	10	10
25	1	1
53979	22	22
117218	43	43
54055	6	6
46	1	1
26513	0	1
29984	8	8
15957	135	135
8726	1	1
32497	19	19
26948	4	4
50975	0	1
50731	29	29
2533	23	23
72491	44	44
16697	0	1
23243	0	1
1199	5	4
61453	7	7
637	15	15
3605	8	8
6065	7	7
21240	1	0
10621	3	3
177	1	1
84	20	20
3395	40	40
23182	38	39
3803	27	27
1345	0	1
7416	1	0
16699	2	3
6667	48	48
11690	7	8
23566	23	23
747	14	14
4705	14	14
47769	0	1
23380	2	2
54	1	0
11	1	1
290	1	1
83	1	0
21	0	1
45	1	1
16482	43	43
6714	4	4
50	1	1
70	1	1
1555	1	0
14346	29	29
45168	3	2
893	0	1
61206	4	3
21	1	1
597	4	4
2147	1	1
33	1	1
748	0	1
106179	0	1
49283	1	1
99	1	1
20873	5	5
3143	12	12
14595	1	0
17499	10	10
50697	5	5
3000	45	44
8417	21	22
6517	8	10
5443	1	1
148	1	1
385	12	12
2060	40	40
11461	5	5
7651	5	5
32	1	1
30006	1	1
21	1	1
6012	5	5
1685	25	25
2658	1	1
50	1	1
10106	4	4
10693	23	23
23273	0	1
32591	0	1
30186	1	0
1849	38	38
34116	1	1
64	1	1
10849	0	1
52	1	1
35291	0	1
100631

chain 3865 Pf3D7_13 2895605 + 0 103 Pf3D7_03_v3 1067971 - 806 1017 1491
55	29	137
19

chain 582 Pf3D7_13 2895605 + 59 84 Pf3D7_08_v3 1472805 - 300 325 1848
25

chain 268024453 Pf3D7_13 2895605 + 103 2895605 Pf3D7_13_v3 2925236 + 0 2923395 2
95897	103	103
19229	0	1
1073	1516	1836
85	422	0
10148	0	2
50246	1	1
58	4	4
78	29	29
70	3	3
51	3	3
133	1	1
143687	1	0
89654	1	0
1580	28	28
180	1	1
47	1	1
7672	0	2
672	0	1
7694	1	0
170205	3	3
36	1	1
119484	0	1
47612	6	6
137909	1	1
26	1	1
10304	18	18
318065	7	7
13032	0	3
226235	0	1
11417	0	1
37210	0	1
100731	0	164
106282	0	1
52953	58	60
174	118	3809
802	1	0
3962	25	25
56390	10	10
86	0	1
51	0	1
82	0	1
107	0	4
175260	4	4
74874	2	0
83280	37	37
140246	5	5
48013	7	8
434	1	0
63267	27	27
134	5	5
52	0	1
30	1	0
63	1	1
11532	18	18
63873	1	1
72	1	0
9027	1	1
57	1	1
44285	25	24
110790	32	33
123853	31	31
11565	2	0
1009	201	19542
3886	0	1
10733	279	5063
74712

chain 89898 Pf3D7_13 2895605 + 116405 117866 Pf3D7_13_v3 2925236 - 2805848 2806955 694
325	0	41
335	467	72
334

chain 19253 Pf3D7_13 2895605 + 117065 117274 Pf3D7_13_v3 2925236 - 2810190 2810399 2790
209

chain 20873 Pf3D7_13 2895605 + 117274 117532 Pf3D7_13_v3 2925236 - 2808683 2808942 2745
99	19	20
140

chain 2838 Pf3D7_13 2895605 + 2793187 2793218 Pf3D7_13_v3 2925236 + 2796898 2796929 15955
31

chain 304981458 Pf3D7_14 3291871 + 1 3291846 Pf3D7_14_v3 3291936 + 0 3291911 1
64157	0	1
217312	5	5
83639	6	6
107688	10	10
101102	0	1
33515	17	17
206090	0	3
4775	0	1
34539	0	49
17299	0	1
96119	0	1
620	0	2
372506	0	1
25	2	0
510936	15	15
179812	0	4
104	0	1
438	0	1
38	1	1
69258	0	1
239180	1	1
45	1	1
150628	0	1
171565	1	0
98611	1	1
49	1	1
8824	32	31
386	0	1
119227	1	0
1010	20	19
21707	0	1
85063	0	2
295464